PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610621.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 247aa    MW: 26763.9 Da    PI: 10.2756
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.21.6e-1663148186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  e++ +l+rg+lk+++Weev++++      ++  ++ +qCk++++ ++k+yk++k ++++    sss++++fd+l+
  XP_013610621.1  63 CWSEKATGVLIDAWGEIHLELSRGNLKQKHWEEVAERVrskeDNGKAPKTDVQCKNRIDTVKKKYKQEKLTSGG----SSSSWVFFDKLD 148
                     7*************************************8887778899*********************99998....5778******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2561150No hitNo description
Gene3DG3DSA:3.40.50.6208.7E-463120IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MADDEDQIRS HSDSPDPSSS PPPSGKLTVT VASPAPSQKD PDAPPLAPLP IKSSGGGGGR  60
EDCWSEKATG VLIDAWGEIH LELSRGNLKQ KHWEEVAERV RSKEDNGKAP KTDVQCKNRI  120
DTVKKKYKQE KLTSGGSSSS WVFFDKLDRL IGSTAKISSG GSRGLNLYHQ QGKAETPRFG  180
GKARVTSASF KRLPLRRKRN VSDSDSVFEA GVSEDSGDSL PPPPLSKKKQ GGGNKWRELS  240
RAIMRFG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610621.11e-179PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG87e-89ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D3ADS01e-179A0A0D3ADS0_BRAOL; Uncharacterized protein
STRINGBra021536.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-69sequence-specific DNA binding transcription factors